EASE Update Files

The headings above each file correspond to the file structure and file location within EASE. For example, LocusLink numbers.txt will need to be saved to the "Your_EASE_Home"/Data/Convert directory. The files under Data/Convert are needed for both your genelist and population. For example, if your genelist contains Affymetrix probesets from the HG-U133A microarray and you want your population to contain all human LocusLinks, you will need to download Affymetrix probesets-HG-U133A.txt and LocusLink numbers.txt. You will also need to download the Homo sapiens.txt population file and save it in the"Your_EASE_Home"/Lists/LocusLink numbers/Populations directory. Remember that you must select the appropriate id type for your list and background when using EASE. The Data/Convert section contains the categorical system files. The Enhance section contains files for enhancing EASE annotation with annotation from homologous species. In order to download a file, click on the name and the file will open. Then, choose "File">"Save As" from your browser menu and save to the appropriate EASE directory. Alternatively, you can right-click on file names which are hyperlinks and choose "Save Target As". This method is probably best since some files may be large and will need to be fully loaded before they can be saved. This page is the slow beginning of a new update process(eventually automatic) for EASE. For now, files will be placed on the page as requested by users. Therefore, if you need a file, please let us (DAVID Bioinformatics Team) know.
 
 
Data
  Chromosome.txt (Human, Mouse, Rat) 5/28/08  
  Cytoband.txt (Chromosomal location - Human, Mouse, Rat) 5/28/08  
  Gene Name.txt (Human, Mouse, Rat) 5/28/08  
  Gene Symbol.txt (Human, Mouse, Rat) 5/28/08  
  KEGG_Pathway.txt (Human, Mouse, Rat) 12/22/06  
  Convert  
    LocusLink numbers.txt (Human, Mouse, Rat) 5/28/08  
     
    Official Gene Symbol.txt (Human, Mouse, Rat) 5/28/08  
     
  Class  
    GO Biological Process.txt (Human, Mouse, Rat) 5/28/08  
    GO Cellular Component.txt (Human, Mouse, Rat) 5/28/08  
    GO Molecular Function.txt (Human, Mouse, Rat) 5/28/08  
    Chromosome.txt (Human, Mouse, Rat) 5/28/08  
    KEGG_Pathway.txt (Human, Mouse, Rat) 12/22/06  
    Chicken_GO Biological Process.txt 5/28/08  
    Chicken_GO Cellular Component.txt 5/28/08  
    Chicken_GO Molecular Function.txt 5/28/08  
Enhance  
  Homologenes.txt  
  Homologene COGs.txt  
Lists  
  Affymetrix probesets  
    Populations  
       
  LocusLink numbers  
    Populations  
       
  Agilent probesets  
    Populations